Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
hepatocellular carcinoma
controlid
SL3976,SL1781
labexpid
SL3976,SL1781
replicate
1,2
cell description
liver carcinoma
cell karyotype
cancer
cell lineage
endoderm
cell sex
M
antibody
RevXlinkChromatin
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL1781
labexpid
SL1781
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803463: HudsonAlpha_ChipSeq_HepG2_RevXlinkChromatin_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
74121972
Reads aligned (%)
92.9
Duplicates removed (%)
3.9
Number of peaks
1120 (qval < 1E-05)

hg19

Number of total reads
74121972
Reads aligned (%)
92.3
Duplicates removed (%)
5.0
Number of peaks
1249 (qval < 1E-05)

Base call quality data from DBCLS SRA