SRX100500
GSM803455: HudsonAlpha ChipSeq HeLa-S3 TAF1 PCR1x

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TAF1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell lineage
ectoderm
antibody antibodydescription
Mouse monoclonal (p250). Antibody Target: TAF1
antibody targetdescription
TAF1 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 250kDa. Also designated TAF250.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-735
protocol description
one 15-cycle round of PCR (Myers)
controlid
SL592
labexpid
SL590,SL706
labversion
SL590,SL706
replicate
1,2
softwareversion
MACS
antibody vendorid
sc-735
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR1x
protocol description
1-cycle of PCR (Myers)
controlid
SL592
labexpid
SL590
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803455: HudsonAlpha_ChipSeq_HeLa-S3_TAF1_PCR1x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
64876642
Reads aligned (%)
57.9
Duplicates removed (%)
11.7
Number of peaks
17227 (qval < 1E-05)

hg19

Number of total reads
64876642
Reads aligned (%)
57.4
Duplicates removed (%)
13.0
Number of peaks
17218 (qval < 1E-05)

Base call quality data from DBCLS SRA