Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Uterus
Cell type
ECC-1
Primary Tissue
Uterus
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
ECC-1
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
epithelial cell line derived from an endometrium adenocarcinoma, fetal membranes were collected from women who underwent planned cesarean delivery at term, before labor and without rupture of membranes
cell lineage
endoderm
treatment description
1 h with 0.02% Dimethyl sufloxide (DMSO) (Myers)
controlid
SL1882
labexpid
SL1882
cell karyotype
cancer
cell lineage
epithelia
cell sex
F
antibody
RevXlinkChromatin
treatment
DMSO_0.02pct
treatment description
1 h with 0.02% DMSO (Myers)
protocol
v041610.2
protocol description
2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid
SL1882
labexpid
SL1882
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803445: HudsonAlpha_ChipSeq_ECC-1_RevXlinkChromatin_DMSO_0.02pct_v041610.2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
47601248
Reads aligned (%)
79.0
Duplicates removed (%)
1.8
Number of peaks
969 (qval < 1E-05)

hg19

Number of total reads
47601248
Reads aligned (%)
78.3
Duplicates removed (%)
3.0
Number of peaks
1202 (qval < 1E-05)

Base call quality data from DBCLS SRA