Antigen

Antigen Class

RNA polymerase

Antigen

RNA polymerase II

Cell type

Cell type Class

Blood

Cell type

K-562

Primary Tissue

Blood

Tissue Diagnosis

Leukemia Chronic Myelogenous

Sample

source_name

K562

biomaterial_provider

ATCC

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

antibody antibodydescription

Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL2

antibody targetdescription

This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes

antibody vendorname

abcam

antibody vendorid

ab5408

controlid

SL2455

labexpid

SL2940,SL2939

replicate

1,2

softwareversion

MACS

antibody

Pol2-4H8

antibody antibodydescription

Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade

antibody targetdescription

This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes

antibody vendorname

Abcam

antibody vendorid

ab5408

treatment

None

treatment description

No special treatment or protocol applies

protocol

v041610.1

protocol description

2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

controlid

SL2455

labexpid

SL2939

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803443: HudsonAlpha_ChipSeq_K562_Pol2-4H8_v041610.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

46172685

Reads aligned (%)

84.5

Duplicates removed (%)

21.2

Number of peaks

35401 (qval < 1E-05)

hg19

Number of total reads

46172685

Reads aligned (%)

84.0

Duplicates removed (%)

21.1

Number of peaks

35368 (qval < 1E-05)