Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ETS1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal IgG. Antibody Target: ETS1
antibody targetdescription
ETS transcriptions factors, such as ETS1, regulate numerous genes and are involved in stem cell development, cell senescence and death, and tumorigenesis
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-350
controlid
SL2455
labexpid
SL3182,SL2262
replicate
1,2
softwareversion
MACS
antibody
ETS1
antibody antibodydescription
Rabbit polyclonal IgG
antibody targetdescription
ETS transcriptions factors, such as ETS1, regulate numerous genes and are involved in stem cell development, cell senescence and death, and tumorigenesis
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-350
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL2455
labexpid
SL2262
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803442: HudsonAlpha_ChipSeq_K562_ETS1_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
51298528
Reads aligned (%)
73.8
Duplicates removed (%)
13.4
Number of peaks
15542 (qval < 1E-05)

hg38

Number of total reads
51298528
Reads aligned (%)
74.4
Duplicates removed (%)
13.1
Number of peaks
15378 (qval < 1E-05)

Base call quality data from DBCLS SRA