Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

controlid

SL1613

labexpid

SL1613

cell organism

human

cell description

lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

antibody

RevXlinkChromatin

treatment

None

treatment description

No special treatment or protocol applies

protocol

v041610.1

protocol description

2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

controlid

SL1613

labexpid

SL1613

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803436: HudsonAlpha_ChipSeq_GM12878_RevXlinkChromatin_v041610.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

62063640

Reads aligned (%)

93.6

Duplicates removed (%)

48.0

Number of peaks

451 (qval < 1E-05)

hg19

Number of total reads

62063640

Reads aligned (%)

90.6

Duplicates removed (%)

47.4

Number of peaks

780 (qval < 1E-05)