Antigen

Antigen Class

TFs and others

Antigen

MEF2C

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

antibody antibodydescription

Goat polyclonal IgG, epitope mapping near the C-terminus of MEF2C of human origin. Antibody Target: MEF2C

antibody targetdescription

This locus encodes a member of the MADS box transcription enhancer factor 2 (MEF2) family of proteins, which play a role in myogenesis. The encoded protein, MEF2 polypeptide C, has both trans-activating and DNA binding activities. This protein may play a role in maintaining the differentiated state of muscle cells. Mutations and deletions at this locus have been associated with severe mental retardation, stereotypic movements, epilepsy, and cerebral malformation. Alternatively spliced transcript variants have been described. (provided by RefSeq)

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-13268

controlid

SL1613

labexpid

SL1654,SL2127

replicate

1,2

softwareversion

MACS

antibody antibodydescription

Goat polyclonal IgG, epitope mapping near the C-terminus of MEF2C of human origin.

antibody targetdescription

This locus encodes a member of the MADS box transcription enhancer factor 2 (MEF2) family of proteins, which play a role in myogenesis. The encoded protein, MEF2 polypeptide C, has both trans-activating and DNA binding activities. This protein may play a role in maintaining the differentiated state of muscle cells. Mutations and deletions at this locus have been associated with severe mental retardation, stereotypic movements, epilepsy, and cerebral malformation. Alternatively spliced transcript variants have been described. (provided by RefSeq)

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-13268

treatment

None

treatment description

No special treatment or protocol applies

protocol

v041610.1

protocol description

2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

controlid

SL1613

labexpid

SL1654

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803420: HudsonAlpha_ChipSeq_GM12878_MEF2C_(SC-13268)_v041610.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

48786280

Reads aligned (%)

74.0

Duplicates removed (%)

20.6

Number of peaks

11429 (qval < 1E-05)

hg19

Number of total reads

48786280

Reads aligned (%)

69.9

Duplicates removed (%)

18.0

Number of peaks

11757 (qval < 1E-05)