Antigen

Antigen Class

TFs and others

Antigen

RAD21

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

antibody antibodydescription

Rabbit polyclonal. Antibody Target: RAD21

antibody targetdescription

Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

antibody vendorname

abcam

antibody vendorid

ab992

controlid

SL1613

labexpid

SL3933,SL3934

replicate

1,2

softwareversion

MACS

antibody antibodydescription

Rabbit polyclonal

antibody targetdescription

Synthetic peptide (Human) conjugated to KLH - which represents a portion of human Rad21 encoded within exon 14

antibody vendorname

Abcam

antibody vendorid

ab992

treatment

None

treatment description

No special treatment or protocol applies

protocol

v041610.1

protocol description

2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)

controlid

SL1613

labexpid

SL3933

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803416: HudsonAlpha_ChipSeq_GM12878_Rad21_v041610.1

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg19

Number of total reads

45741895

Reads aligned (%)

86.7

Duplicates removed (%)

35.1

Number of peaks

47730 (qval < 1E-05)

hg38

Number of total reads

45741895

Reads aligned (%)

87.8

Duplicates removed (%)

34.5

Number of peaks

46025 (qval < 1E-05)