Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ELF1

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
hepatocellular carcinoma
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of Elf-1 of human origin. Antibody Target: ELF1
antibody targetdescription
This gene encodes an E26 transformation-specific related transcription factor. The encoded protein is primarily expressed in lymphoid cells and acts as both an enhancer and a repressor to regulate transcription of various genes. Alternative splicing results in multiple transcript variants. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-631
controlid
SL3976,SL1781
labexpid
SL3645,SL3986
replicate
1,2
softwareversion
MACS
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of Elf-1 of human origin.
antibody targetdescription
This gene encodes an E26 transformation-specific related transcription factor. The encoded protein is primarily expressed in lymphoid cells and acts as both an enhancer and a repressor to regulate transcription of various genes. Alternative splicing results in multiple transcript variants. (provided by RefSeq)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-631
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL1781
labexpid
SL3645
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803415: HudsonAlpha_ChipSeq_HepG2_ELF1_(SC-631)_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
49079223
Reads aligned (%)
86.1
Duplicates removed (%)
7.7
Number of peaks
25642 (qval < 1E-05)

hg38

Number of total reads
49079223
Reads aligned (%)
87.6
Duplicates removed (%)
6.7
Number of peaks
25626 (qval < 1E-05)

Base call quality data from DBCLS SRA