Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TAF7

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Mouse monoclonal IgG, raised against recombinant TAF II p55 (TAF7) of human origin. Antibody Target: TAF7
antibody targetdescription
The intronless gene for this transcription coactivator is located between the protocadherin beta and gamma gene clusters on chromosome 5. The protein encoded by this gene is a component of the TFIID protein complex, a complex which binds to the TATA box in class II promoters and recruits RNA polymerase II and other factors. This particular subunit interacts with the largest TFIID subunit, as well as multiple transcription activators. The protein is required for transcription by promoters targeted by RNA polymerase II (RefSeq).
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-101167
controlid
SL2455
labexpid
SL3568,SL3274
replicate
1,2
softwareversion
MACS
antibody
TAF7_(SC-101167)
antibody antibodydescription
Mouse monoclonal IgG, raised against recombinant TAF II p55 (TAF7) of human origin.
antibody targetdescription
The intronless gene for this transcription coactivator is located between the protocadherin beta and gamma gene clusters on chromosome 5. The protein encoded by this gene is a component of the TFIID protein complex, a complex which binds to the TATA box in class II promoters and recruits RNA polymerase II and other factors. This particular subunit interacts with the largest TFIID subunit, as well as multiple transcription activators. The protein is required for transcription by promoters targeted by RNA polymerase II (RefSeq).
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-101167
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL2455
labexpid
SL3274
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803407: HudsonAlpha_ChipSeq_K562_TAF7_(SC-101167)_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
51520056
Reads aligned (%)
73.2
Duplicates removed (%)
16.2
Number of peaks
4641 (qval < 1E-05)

hg38

Number of total reads
51520056
Reads aligned (%)
74.5
Duplicates removed (%)
15.5
Number of peaks
4546 (qval < 1E-05)

Base call quality data from DBCLS SRA