Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
YY1

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1
antibody targetdescription
YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-281
protocol description
one 15-cycle round of PCR (Myers)
controlid
SL1613,SL1394
labexpid
SL1475,SL2129
replicate
1,2
softwareversion
MACS
antibody targetdescription
YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-281
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR1x
protocol description
1-cycle of PCR (Myers)
controlid
SL1394
labexpid
SL1475
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803406: HudsonAlpha_ChipSeq_GM12878_YY1_(SC-281)_PCR1x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
52950380
Reads aligned (%)
70.9
Duplicates removed (%)
15.5
Number of peaks
48029 (qval < 1E-05)

hg38

Number of total reads
52950380
Reads aligned (%)
72.0
Duplicates removed (%)
16.8
Number of peaks
46539 (qval < 1E-05)

Base call quality data from DBCLS SRA