Antigen

Antigen Class

TFs and others

Antigen

YY1

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

antibody antibodydescription

Rabbit polyclonal IgG, epitope mapping at the C-terminus of YY1 of human origin. Antibody Target: YY1

antibody targetdescription

YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-281

protocol description

one 15-cycle round of PCR (Myers)

controlid

SL1613,SL1394

labexpid

SL1475,SL2129

replicate

1,2

softwareversion

MACS

antibody targetdescription

YY1 is a ubiquitously distributed transcription factor belonging to the GLI-Kruppel class of zinc finger proteins. The protein is involved in repressing and activating a diverse number of promoters. YY1 may direct histone deacetylases and histone acetyltransferases to a promoter in order to activate or repress the promoter, thus implicating histone modification in the function of YY1

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-281

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR1x

protocol description

1-cycle of PCR (Myers)

controlid

SL1394

labexpid

SL1475

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803406: HudsonAlpha_ChipSeq_GM12878_YY1_(SC-281)_PCR1x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

52950380

Reads aligned (%)

86.5

Duplicates removed (%)

16.8

Number of peaks

46539 (qval < 1E-05)

hg19

Number of total reads

52950380

Reads aligned (%)

83.9

Duplicates removed (%)

15.5

Number of peaks

48029 (qval < 1E-05)