Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HNF4G

Cell type

Cell type Class
Liver
Cell type
Hep G2
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
HepG2
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
hepatocellular carcinoma
antibody antibodydescription
Goat polyclonal IgG, epitope mapping at the C-terminus of HNF4G of human origin. Antibody Target: HNF4G
antibody targetdescription
Hepatocyte nuclear factor 4 gamma (HNF4G) also known as NR2A2 (nuclear receptor subfamily 2, group A, member 2) is a nuclear receptor that in humans is encoded by the HNF4G gene
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-6558
controlid
SL1781
labexpid
SL3178,SL3463
replicate
1,2
softwareversion
MACS
antibody antibodydescription
Goat polyclonal IgG, epitope mapping at the C-terminus of HNF4G of human origin.
antibody targetdescription
Hepatocyte nuclear factor 4 gamma (HNF4G) also known as NR2A2 (nuclear receptor subfamily 2, group A, member 2) is a nuclear receptor that in humans is encoded by the HNF4G gene
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-6558
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL1781
labexpid
SL3178
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803404: HudsonAlpha_ChipSeq_HepG2_HNF4G_(SC-6558)_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
67310126
Reads aligned (%)
77.7
Duplicates removed (%)
15.1
Number of peaks
27451 (qval < 1E-05)

hg38

Number of total reads
67310126
Reads aligned (%)
79.1
Duplicates removed (%)
14.1
Number of peaks
27081 (qval < 1E-05)

Base call quality data from DBCLS SRA