Antigen

Antigen Class

TFs and others

Antigen

SPI1

Cell type

Cell type Class

Blood

Cell type

GM12891

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

Sample

source_name

GM12891

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project, CEPH/Utah pedigree 1463, treatment: Epstein-Barr Virus transformed

antibody antibodydescription

Rabbit Polyclonal IgG. Antibody Target: PU1

antibody targetdescription

PU.1 (H-135)

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-22805

protocol description

one 15-cycle round of PCR (Myers)

controlid

SL817

labexpid

SL977,SL948

labversion

SL977,SL948

replicate

1,2

softwareversion

MACS

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-22805

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR1x

protocol description

1-cycle of PCR (Myers)

controlid

SL817

labexpid

SL977

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803398: HudsonAlpha_ChipSeq_GM12891_PU.1_PCR1x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

65392754

Reads aligned (%)

73.2

Duplicates removed (%)

15.4

Number of peaks

64791 (qval < 1E-05)

hg19

Number of total reads

65392754

Reads aligned (%)

71.5

Duplicates removed (%)

15.5

Number of peaks

67108 (qval < 1E-05)