Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
BCL11A

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription
Mouse monoclonal [18B12DE6] to Ctip1. Raised against a cocktail of BCL11A fusion proteins. Reacts with human and mouse. Tested for ICC/IF, IHC-P, IP, WB. Antibody Target: BCL11A
antibody targetdescription
This gene encodes a C2H2 type zinc-finger protein by its similarity to the mouse Bcl11a/Evi9 protein. Functions as a myeloid and B-cell proto-oncogene. May play important roles in leukemogenesis and hematopoiesis. An essential factor in lymphopoiesis,is required for B-cell formation in fetal liver. May function as a modulator of the transcriptional repression activity of ARP1 (By similarity)
antibody vendorname
abcam
antibody vendorid
ab19489
protocol description
one 15-cycle round of PCR (Myers)
controlid
SL516,SL517
labexpid
SL976,SL650
labversion
8,5
replicate
1,2
softwareversion
MACS
antibody vendorname
Abcam
antibody vendorid
ab19489
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR1x
protocol description
1-cycle of PCR (Myers)
controlid
SL516
labexpid
SL650
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803388: HudsonAlpha_ChipSeq_GM12878_BCL11A_PCR1x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
77255712
Reads aligned (%)
50.3
Duplicates removed (%)
6.8
Number of peaks
25656 (qval < 1E-05)

hg38

Number of total reads
77255712
Reads aligned (%)
51.5
Duplicates removed (%)
6.4
Number of peaks
25073 (qval < 1E-05)

Base call quality data from DBCLS SRA