Antigen

Antigen Class

TFs and others

Antigen

EP300

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

GM12878

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

antibody antibodydescription

Rabbit Polyclonal. Antibody Target: P300

antibody targetdescription

EP300(c-20)

antibody vendorname

Santa Cruz Biotechnology

antibody vendorid

sc-585

protocol description

one 15-cycle round of PCR (Myers)

controlid

SL516,SL517

labexpid

SL564,SL551

labversion

3,4

replicate

1,2

softwareversion

MACS

antibody vendorname

Santa Cruz Biotech

antibody vendorid

sc-585

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR1x

protocol description

1-cycle of PCR (Myers)

controlid

SL516

labexpid

SL551

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803387: HudsonAlpha_ChipSeq_GM12878_p300_PCR1x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

35471222

Reads aligned (%)

78.4

Duplicates removed (%)

6.0

Number of peaks

3700 (qval < 1E-05)

hg19

Number of total reads

35471222

Reads aligned (%)

77.4

Duplicates removed (%)

7.0

Number of peaks

3879 (qval < 1E-05)