Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
EP300

Cell type

Cell type Class
Blood
Cell type
GM12878
Tissue
blood
Lineage
mesoderm
Description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Attributes by original data submitter

Sample

source_name
GM12878
biomaterial_provider
GM12878
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell description
B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription
Rabbit Polyclonal. Antibody Target: P300
antibody targetdescription
EP300(c-20)
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-585
protocol description
one 15-cycle round of PCR (Myers)
controlid
SL516,SL517
labexpid
SL564,SL551
labversion
3,4
replicate
1,2
softwareversion
MACS
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-585
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR1x
protocol description
1-cycle of PCR (Myers)
controlid
SL516
labexpid
SL551
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803387: HudsonAlpha_ChipSeq_GM12878_p300_PCR1x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
35471222
Reads aligned (%)
71.9
Duplicates removed (%)
7.0
Number of peaks
3879 (qval < 1E-05)

hg38

Number of total reads
35471222
Reads aligned (%)
73.7
Duplicates removed (%)
6.0
Number of peaks
3700 (qval < 1E-05)

Base call quality data from DBCLS SRA