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For hg19
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg38
BigWig
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Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: SPI1
wikigenes
PDBj
CellType: K-562
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX100429
GSM803384: HudsonAlpha ChipSeq K562 PU.1 PCR1x
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
SPI1
Cell type
Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous
Attributes by original data submitter
Sample
source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit Polyclonal IgG. Antibody Target: PU1
antibody targetdescription
PU.1 (H-135)
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-22805
protocol description
one 15-cycle round of PCR (Myers)
controlid
SL518,SL519
labexpid
SL705,SL646
labversion
4
replicate
1,2
softwareversion
MACS
antibody targetdescription
PU.1 (H-135)
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-22805
treatment
None
treatment description
No special treatment or protocol applies
protocol
PCR1x
protocol description
1-cycle of PCR (Myers)
controlid
SL518
labexpid
SL646
replicate
1
replicate description
tier 1
Sequenced DNA Library
library_name
GSM803384: HudsonAlpha_ChipSeq_K562_PU.1_PCR1x
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
53813125
Reads aligned (%)
62.8
Duplicates removed (%)
9.3
Number of peaks
46606 (qval < 1E-05)
hg38
Number of total reads
53813125
Reads aligned (%)
63.9
Duplicates removed (%)
8.3
Number of peaks
46644 (qval < 1E-05)
Base call quality data from
DBCLS SRA