Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ATF3

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
biomaterial_provider
ATCC
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of ATF3 of human origin. Antibody Target: ATF3
antibody targetdescription
Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.
antibody vendorname
Santa Cruz Biotechnology
antibody vendorid
sc-188
controlid
SL2455
labexpid
SL3926,SL3184
replicate
1,2
softwareversion
MACS
antibody
ATF3
antibody antibodydescription
Rabbit polyclonal IgG, epitope mapping at the C-terminus of ATF3 of human origin.
antibody targetdescription
Activating transcription factor 3. A bZIP transcription factor and member of the Ca2+/cAMP response element-binding (CREB) protein family. ATF3 is found to act both as an activator and repressor of transcription.
antibody vendorname
Santa Cruz Biotech
antibody vendorid
sc-188
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.1
protocol description
2x10^7 cells, fragmentation by bioruptor, one 15-cycle round of PCR (Myers)
controlid
SL2455
labexpid
SL3184
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803380: HudsonAlpha_ChipSeq_K562_ATF3_v041610.1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg19

Number of total reads
67868319
Reads aligned (%)
76.3
Duplicates removed (%)
15.6
Number of peaks
22475 (qval < 1E-05)

hg38

Number of total reads
67868319
Reads aligned (%)
77.0
Duplicates removed (%)
15.1
Number of peaks
22484 (qval < 1E-05)

Base call quality data from DBCLS SRA