SRX100409
GSM803364: HudsonAlpha ChipSeq H1-hESC RevXlinkChromatin v041610.2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H1
NA
NA

Attributes by original data submitter

Sample

source_name
H1-hESC
biomaterial_provider
WiCell Research Institute
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
controlid
SL969
labexpid
SL969
cell
H1-hESC
cell organism
human
cell description
embryonic stem cells
cell karyotype
normal
cell lineage
inner cell mass
cell sex
M
antibody
RevXlinkChromatin
treatment
None
treatment description
No special treatment or protocol applies
protocol
v041610.2
protocol description
2x10^7 cells, fragmentation by probe-in sonicator, one 15-cycle round of PCR (Myers)
controlid
SL969
labexpid
SL969
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM803364: HudsonAlpha_ChipSeq_H1-hESC_RevXlinkChromatin_v041610.2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
57444550
Reads aligned (%)
60.1
Duplicates removed (%)
2.1
Number of peaks
1193 (qval < 1E-05)

hg19

Number of total reads
57444550
Reads aligned (%)
59.6
Duplicates removed (%)
3.1
Number of peaks
1234 (qval < 1E-05)

Base call quality data from DBCLS SRA