ChIP-Atlas: SRX100397

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: Input control
Antigen: Input control

Cell type

Cell type Class: Blood
Cell type: K-562
Primary Tissue: Blood
Tissue Diagnosis: Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name: K562
biomaterial_provider: ATCC
datatype: ChipSeq
datatype description: Chromatin IP Sequencing
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL518,SL519,SL1396,SL1397
labexpid: SL518,SL519,SL1396,SL1397
labversion: 1,2
replicate: 1,3,2,4
cell karyotype: cancer
cell lineage: mesoderm
cell sex: F
antibody: RevXlinkChromatin
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL518
labexpid: SL518
replicate: 1
replicate description: tier 1

Sequenced DNA Library

library_name: GSM803352: HudsonAlpha_ChipSeq_K562_RevXlinkChromatin_PCR1x
library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP

Sequencing Platform

instrument_model: Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 157295172
Reads aligned (%): 77.5
Duplicates removed (%): 14.8
Number of peaks: 18147 (qval < 1E-05)

hg19

Number of total reads: 157295172
Reads aligned (%): 76.8
Duplicates removed (%): 15.8
Number of peaks: 18409 (qval < 1E-05)

Base call quality data from DBCLS SRA