Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878

biomaterial_provider

Coriell

datatype

ChipSeq

datatype description

Chromatin IP Sequencing

cell description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

protocol description

one 15-cycle round of PCR (Myers)

controlid

SL678,SL1394,SL1395,SL516,SL517

labexpid

SL678,SL1394,SL1395,SL516,SL517

replicate

1,3,2,5,4

cell karyotype

normal

cell lineage

mesoderm

cell sex

F

antibody

RevXlinkChromatin

treatment

None

treatment description

No special treatment or protocol applies

protocol

PCR1x

protocol description

1-cycle of PCR (Myers)

controlid

SL516

labexpid

SL516

replicate

1

replicate description

tier 1

Sequenced DNA Library

library_name

GSM803351: HudsonAlpha_ChipSeq_GM12878_RevXlinkChromatin_PCR1x

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

Sequencing Platform

instrument_model

Illumina Genome Analyzer

hg38

Number of total reads

293458320

Reads aligned (%)

60.7

Duplicates removed (%)

42.3

Number of peaks

2846 (qval < 1E-05)

hg19

Number of total reads

293458320

Reads aligned (%)

59.6

Duplicates removed (%)

43.3

Number of peaks

2945 (qval < 1E-05)