Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Liver
Cell type
Liver
MeSH Description
A large lobed glandular organ in the abdomen of vertebrates that is responsible for detoxification, metabolism, synthesis and storage of various substances.

Attributes by original data submitter

Sample

source_name
Liver tissue
strain
C57BL/6
tissue
Liver
time point
CT6
chip antibody
None

Sequenced DNA Library

library_name
GSM577714: Input_CT6_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
2969276
Reads aligned (%)
60.5
Duplicates removed (%)
1.4
Number of peaks
60 (qval < 1E-05)

mm9

Number of total reads
2969276
Reads aligned (%)
60.4
Duplicates removed (%)
1.6
Number of peaks
52 (qval < 1E-05)

Base call quality data from DBCLS SRA