Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Blood
Cell type
Peripheral blood
NA
NA

Attributes by original data submitter

Sample

isolate
Lymphoblastoid cell line from patient carrying mutation in the SMC1A gene
age
7 years
biomaterial_provider
"Antonio Musio, Istituto di Ricerca Genetica e Biomedica C.N.R., Via Moruzzi, 1, 56124 Pisa, Italy "
sex
female
tissue
Peripheral blood

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
53198042
Reads aligned (%)
98.8
Duplicates removed (%)
16.8
Number of peaks
655 (qval < 1E-05)

hg19

Number of total reads
53198042
Reads aligned (%)
97.7
Duplicates removed (%)
17.5
Number of peaks
986 (qval < 1E-05)

Base call quality data from DBCLS SRA