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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: Peripheral blood
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX1003364
ChIP-Seq SMC1A AG14981
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Blood
Cell type
Peripheral blood
NA
NA
Attributes by original data submitter
Sample
isolate
Lymphoblastoid cell line (Coriell Cell Repositories )
age
7 years
biomaterial_provider
"Antonio Musio, Istituto di Ricerca Genetica e Biomedica C.N.R., Via Moruzzi, 1, 56124 Pisa, Italy "
sex
female
tissue
Peripheral blood
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
50357019
Reads aligned (%)
67.6
Duplicates removed (%)
25.3
Number of peaks
12831 (qval < 1E-05)
hg19
Number of total reads
50357019
Reads aligned (%)
66.9
Duplicates removed (%)
25.8
Number of peaks
13357 (qval < 1E-05)
Base call quality data from
DBCLS SRA