Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Bone
Cell type
HT-1080
Primary Tissue
Bone
Tissue Diagnosis
Fibrosarcoma

Attributes by original data submitter

Sample

source_name
fibroscarcoma cell line HT1080
dox treatment
No DOX
antibody
none
integration
chr8

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was done as previous (Hawkins et al.,Cell stem cell 2010, 6(5):479-491) , using 20ug of chromatin and 3ug of antibody was used per IP ChIP library was prepared according to Illumina protocol with modifications according to Hawkins et al.,Cell stem cell 2010, 6(5):479-491.

Sequencing Platform

instrument_model
Illumina HiSeq 2500

hg38

Number of total reads
22866037
Reads aligned (%)
84.8
Duplicates removed (%)
2.8
Number of peaks
435 (qval < 1E-05)

hg19

Number of total reads
22866037
Reads aligned (%)
84.0
Duplicates removed (%)
4.2
Number of peaks
634 (qval < 1E-05)

Base call quality data from DBCLS SRA