SRX100273
GSM801064: CARM1 E2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CARM1

Cell type

Cell type Class
Breast
Cell type
H3396
NA
NA

Attributes by original data submitter

Sample

source_name
H3396 cells
cell line
H3396 cells
treatment
estrogen
comment
In house Rabbit polyclonal: aa. 595-608
chip antibody
CARM1 aa. 595-608
chip antibody manufacturer
In house

Sequenced DNA Library

library_name
GSM801064: CARM1 E2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
27387714
Reads aligned (%)
97.8
Duplicates removed (%)
8.7
Number of peaks
521 (qval < 1E-05)

hg19

Number of total reads
27387714
Reads aligned (%)
97.2
Duplicates removed (%)
10.4
Number of peaks
563 (qval < 1E-05)

Base call quality data from DBCLS SRA