SRX100266
GSM801057: ERa EtOH

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
H3396
NA
NA

Attributes by original data submitter

Sample

source_name
H3396 cells
cell line
H3396 cells
treatment
ethanol
comment
Santa Cruz: ERa (HC20)
chip antibody
ERa
chip antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_name
GSM801057: ERa EtOH
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
4706909
Reads aligned (%)
93.0
Duplicates removed (%)
29.1
Number of peaks
445 (qval < 1E-05)

hg19

Number of total reads
4706909
Reads aligned (%)
91.4
Duplicates removed (%)
32.6
Number of peaks
467 (qval < 1E-05)

Base call quality data from DBCLS SRA