SRX100265
GSM801056: ERa E2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ESR1

Cell type

Cell type Class
Breast
Cell type
H3396
NA
NA

Attributes by original data submitter

Sample

source_name
H3396 cells
cell line
H3396 cells
treatment
estrogen
comment
Santa Cruz: ERa (HC20)
chip antibody
ERa
chip antibody manufacturer
Santa Cruz

Sequenced DNA Library

library_name
GSM801056: ERa E2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
6535267
Reads aligned (%)
94.8
Duplicates removed (%)
28.6
Number of peaks
1447 (qval < 1E-05)

hg19

Number of total reads
6535267
Reads aligned (%)
93.0
Duplicates removed (%)
32.9
Number of peaks
1448 (qval < 1E-05)

Base call quality data from DBCLS SRA