SRX100260
GSM801051: CBPR742m E2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Breast
Cell type
H3396
NA
NA

Attributes by original data submitter

Sample

source_name
H3396 cells
cell line
H3396 cells
treatment
estrogen
comment
In house Rabbit polyclonal: peptide MGP(Rme2a)AASPMC
chip antibody
peptide MGP(Rme2a)AASPMC
chip antibody manufacturer
In house

Sequenced DNA Library

library_name
GSM801051: CBPR742m E2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
16342322
Reads aligned (%)
91.8
Duplicates removed (%)
32.1
Number of peaks
736 (qval < 1E-05)

hg19

Number of total reads
16342322
Reads aligned (%)
90.5
Duplicates removed (%)
35.1
Number of peaks
956 (qval < 1E-05)

Base call quality data from DBCLS SRA