Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
Kc cells
chip antibody
dCTCF
cell line
Kc167 Drosophila Embryonic
cell cycle phase
Mitosis

Sequenced DNA Library

library_name
GSM807544: dCTCF_mitosis_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

dm3

Number of total reads
12412038
Reads aligned (%)
56.6
Duplicates removed (%)
54.6
Number of peaks
2819 (qval < 1E-05)

dm6

Number of total reads
12412038
Reads aligned (%)
56.1
Duplicates removed (%)
57.7
Number of peaks
2430 (qval < 1E-05)

Base call quality data from DBCLS SRA