Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Cell line
Cell type
Kc167
Source
e/se
Developmental Stage
dorsal closure stage

Attributes by original data submitter

Sample

source_name
Kc cells
chip antibody
dCTCF
cell line
Kc167 Drosophila Embryonic
cell cycle phase
Interphase

Sequenced DNA Library

library_name
GSM807543: dCTCF_interphase_ChIPSeq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

dm3

Number of total reads
10437925
Reads aligned (%)
63.5
Duplicates removed (%)
50.9
Number of peaks
3906 (qval < 1E-05)

dm6

Number of total reads
10437925
Reads aligned (%)
63.2
Duplicates removed (%)
53.5
Number of peaks
3174 (qval < 1E-05)

Base call quality data from DBCLS SRA