SRX099899
GSM798322: Broad ChipSeq HeLa-S3 H3K4me1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa-S3
biomaterial_provider
ATCC
biomaterial_type
immortalized cell line
line
HeLa-S3
datatype
ChipSeq
datatype description
Chromatin IP Sequencing
cell lineage
ectoderm
antibody antibodydescription
rabbit polyclonal. Antibody Target: H3K4me1
antibody targetdescription
Histone H3 (mono methyl K4). Is associated with enhancers, and downstream of transcription starts.
antibody vendorname
abcam
antibody vendorid
ab8895
treatment
None
treatment description
No special treatment or protocol applies
controlid
wgEncodeEH001013
replicate
1,2
softwareversion
ScriptureVPaperR3
antibody vendorname
Abcam
antibody vendorid
ab8895
control
std
control description
Standard input signal for most experiments.
controlid
HeLa-S3/Input/std
replicate
1
replicate description
tier 1

Sequenced DNA Library

library_name
GSM798322: Broad_ChipSeq_HeLa-S3_H3K4me1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
49978356
Reads aligned (%)
89.2
Duplicates removed (%)
4.7
Number of peaks
45704 (qval < 1E-05)

hg19

Number of total reads
49978356
Reads aligned (%)
88.7
Duplicates removed (%)
5.7
Number of peaks
45907 (qval < 1E-05)

Base call quality data from DBCLS SRA