SRX099884
GSM808773: H54 cMYC REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Neural
Cell type
D54
NA
NA

Attributes by original data submitter

Sample

source_name
glioblastoma
cell type
glioblastoma
cell line
H54
antibody
cMYC

Sequenced DNA Library

library_name
GSM808773: H54_cMYC_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48235757
Reads aligned (%)
60.0
Duplicates removed (%)
8.3
Number of peaks
1253 (qval < 1E-05)

hg19

Number of total reads
48235757
Reads aligned (%)
59.7
Duplicates removed (%)
9.3
Number of peaks
1420 (qval < 1E-05)

Base call quality data from DBCLS SRA