SRX099883
GSM808772: H54 CTCF REP2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
D54
NA
NA

Attributes by original data submitter

Sample

source_name
glioblastoma
cell type
glioblastoma
cell line
H54
antibody
CTCF

Sequenced DNA Library

library_name
GSM808772: H54_CTCF_REP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
54188729
Reads aligned (%)
93.3
Duplicates removed (%)
32.1
Number of peaks
53421 (qval < 1E-05)

hg38

Number of total reads
54188729
Reads aligned (%)
93.8
Duplicates removed (%)
30.9
Number of peaks
53736 (qval < 1E-05)

Base call quality data from DBCLS SRA