SRX099882
GSM808771: H54 CTCF REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Neural
Cell type
D54
NA
NA

Attributes by original data submitter

Sample

source_name
glioblastoma
cell type
glioblastoma
cell line
H54
antibody
CTCF

Sequenced DNA Library

library_name
GSM808771: H54_CTCF_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
65065130
Reads aligned (%)
94.9
Duplicates removed (%)
58.0
Number of peaks
51468 (qval < 1E-05)

hg38

Number of total reads
65065130
Reads aligned (%)
95.3
Duplicates removed (%)
56.9
Number of peaks
51839 (qval < 1E-05)

Base call quality data from DBCLS SRA