Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast adenocarcinoma cells
cell type
breast adenocarcinoma cells
cell line
MCF7
antibody
INPUT

Sequenced DNA Library

library_name
GSM808758: MCF7_INPUT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

hg38

Number of total reads
30024170
Reads aligned (%)
99.0
Duplicates removed (%)
2.6
Number of peaks
970 (qval < 1E-05)

hg19

Number of total reads
30024170
Reads aligned (%)
98.2
Duplicates removed (%)
3.9
Number of peaks
1267 (qval < 1E-05)

Base call quality data from DBCLS SRA