SRX099865
GSM808754: MCF7 cMYC REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MYC

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast adenocarcinoma cells
cell type
breast adenocarcinoma cells
cell line
MCF7
antibody
cMYC

Sequenced DNA Library

library_name
GSM808754: MCF7_cMYC_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
48518944
Reads aligned (%)
66.0
Duplicates removed (%)
26.0
Number of peaks
32285 (qval < 1E-05)

hg19

Number of total reads
48518944
Reads aligned (%)
65.7
Duplicates removed (%)
26.5
Number of peaks
32221 (qval < 1E-05)

Base call quality data from DBCLS SRA