SRX099864
GSM808753: MCF7 CTCF REP2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast adenocarcinoma cells
cell type
breast adenocarcinoma cells
cell line
MCF7
antibody
CTCF

Sequenced DNA Library

library_name
GSM808753: MCF7_CTCF_REP2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
25775296
Reads aligned (%)
94.7
Duplicates removed (%)
18.1
Number of peaks
57163 (qval < 1E-05)

hg19

Number of total reads
25775296
Reads aligned (%)
94.5
Duplicates removed (%)
18.3
Number of peaks
57005 (qval < 1E-05)

Base call quality data from DBCLS SRA