SRX099863
GSM808752: MCF7 CTCF REP1

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Breast
Cell type
MCF-7
Primary Tissue
Breast
Site of Extraction
Pleura
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
breast adenocarcinoma cells
cell type
breast adenocarcinoma cells
cell line
MCF7
antibody
CTCF

Sequenced DNA Library

library_name
GSM808752: MCF7_CTCF_REP1
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
22593576
Reads aligned (%)
79.0
Duplicates removed (%)
16.6
Number of peaks
51049 (qval < 1E-05)

hg38

Number of total reads
22593576
Reads aligned (%)
79.4
Duplicates removed (%)
16.4
Number of peaks
51251 (qval < 1E-05)

Base call quality data from DBCLS SRA