SRX099410
GSM802409: e1a infected input GAIIx ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
lung fibroblasts
cell line
IMR90 human primary lung embryo fibroblasts
cell type
contact-inhibited IMR90
infection
e1a-infected
passages
6 to 10
chip target
none
chip antibody
none

Sequenced DNA Library

library_name
GSM802409: e1a_infected input GAIIx _ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
44932137
Reads aligned (%)
46.9
Duplicates removed (%)
2.3
Number of peaks
730 (qval < 1E-05)

hg19

Number of total reads
44932137
Reads aligned (%)
46.4
Duplicates removed (%)
3.1
Number of peaks
680 (qval < 1E-05)

Base call quality data from DBCLS SRA