SRX099409
GSM802408: mock-infected input Hiseq ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
lung fibroblasts
cell line
IMR90 human primary lung embryo fibroblasts
cell type
contact-inhibited IMR90
infection
mock-infected
passages
6 to 10
chip target
none
chip antibody
none

Sequenced DNA Library

library_name
GSM802408: mock-infected input Hiseq_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
125117738
Reads aligned (%)
85.2
Duplicates removed (%)
16.2
Number of peaks
77482 (qval < 1E-05)

hg19

Number of total reads
125117738
Reads aligned (%)
84.9
Duplicates removed (%)
16.9
Number of peaks
84611 (qval < 1E-05)

Base call quality data from DBCLS SRA