Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
lung fibroblasts
cell line
IMR90 human primary lung embryo fibroblasts
cell type
contact-inhibited IMR90
infection
mock-infected
passages
6 to 10
chip target
none
chip antibody
none

Sequenced DNA Library

library_name
GSM802407: mock-infected input GAIIx DSG_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg38

Number of total reads
45075489
Reads aligned (%)
47.0
Duplicates removed (%)
2.3
Number of peaks
734 (qval < 1E-05)

hg19

Number of total reads
45075489
Reads aligned (%)
46.6
Duplicates removed (%)
3.0
Number of peaks
688 (qval < 1E-05)

Base call quality data from DBCLS SRA