SRX099406
GSM802405: mock-infected p130 ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RBL2

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
lung fibroblasts
cell line
IMR90 human primary lung embryo fibroblasts
cell type
contact-inhibited IMR90
infection
mock-infected
passages
6 to 10
chip target
p130
chip antibody
sc-C20

Sequenced DNA Library

library_name
GSM802405: mock-infected p130_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

Where can I get the processing logs?

Read processing pipeline log

hg19

Number of total reads
14835227
Reads aligned (%)
77.0
Duplicates removed (%)
5.7
Number of peaks
743 (qval < 1E-05)

hg38

Number of total reads
14835227
Reads aligned (%)
77.8
Duplicates removed (%)
5.0
Number of peaks
756 (qval < 1E-05)

Base call quality data from DBCLS SRA