Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
RB1

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
lung fibroblasts
cell line
IMR90 human primary lung embryo fibroblasts
cell type
contact-inhibited IMR90
infection
mock-infected
passages
6 to 10
chip target
RB1
chip antibody
Cell signalling 4H1

Sequenced DNA Library

library_name
GSM802403: mock-infected RB1_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer IIx

hg19

Number of total reads
47486084
Reads aligned (%)
31.7
Duplicates removed (%)
39.0
Number of peaks
2469 (qval < 1E-05)

hg38

Number of total reads
47486084
Reads aligned (%)
32.6
Duplicates removed (%)
37.7
Number of peaks
2222 (qval < 1E-05)

Base call quality data from DBCLS SRA