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Install and launch IGV before selecting data to visualize
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: H3K18ac
wikigenes
PDBj
CellType: IMR-90
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX099401
GSM802400: e1a H3K18ac ChIP-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
Histone
Antigen
H3K18ac
Cell type
Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal
Attributes by original data submitter
Sample
source_name
lung fibroblasts
cell line
IMR90 human primary lung embryo fibroblasts
cell type
contact-inhibited IMR90
infection
dl1500-infected
passages
6 to 10
chip target
H3K18ac
chip antibody
Custom 814 H3K18ac
Sequenced DNA Library
library_name
GSM802400: e1a H3K18ac_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
125117738
Reads aligned (%)
85.2
Duplicates removed (%)
16.2
Number of peaks
86317 (qval < 1E-05)
hg19
Number of total reads
125117738
Reads aligned (%)
84.9
Duplicates removed (%)
16.9
Number of peaks
84715 (qval < 1E-05)
Base call quality data from
DBCLS SRA