SRX099400
GSM802399: Mock H3K18ac ChIP-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K18ac

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
lung fibroblasts
cell line
IMR90 human primary lung embryo fibroblasts
cell type
contact-inhibited IMR90
infection
mock-infected
passages
6 to 10
chip target
H3K18ac
chip antibody
Custom 814 H3K18ac

Sequenced DNA Library

library_name
GSM802399: Mock H3K18ac_ChIP-seq
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
81605877
Reads aligned (%)
70.5
Duplicates removed (%)
35.8
Number of peaks
2215 (qval < 1E-05)

hg19

Number of total reads
81605877
Reads aligned (%)
69.8
Duplicates removed (%)
37.3
Number of peaks
1969 (qval < 1E-05)

Base call quality data from DBCLS SRA