Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse Ik knockout DP thymocytes
genetic background
C57BL/6 x129S4/SvJae
genotype
Ikaros knockout
cell type
DP thymocytes
developmental stage
pre-leukemic stage II
chip antibody
none

Sequenced DNA Library

library_name
GSM803127: input DNA Ikaros knockout chromatin preleukemic stage2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
25963046
Reads aligned (%)
98.1
Duplicates removed (%)
11.6
Number of peaks
592 (qval < 1E-05)

mm9

Number of total reads
25963046
Reads aligned (%)
98.0
Duplicates removed (%)
11.7
Number of peaks
694 (qval < 1E-05)

Base call quality data from DBCLS SRA