SRX099394
GSM803122: H3K4me3 Ikaros knockout chromatin preleukemic stage2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse Ik knockout DP thymocytes
genetic background
C57BL/6 x129S4/SvJae
genotype
Ikaros knockout
cell type
DP thymocytes
developmental stage
pre-leukemic stage II
chip antibody
H3K4me3
chip antibody manufacturer
Abcam and Millipore
chip antibody catalog number
ab8580 and 07-473

Sequenced DNA Library

library_name
GSM803122: H3K4me3 Ikaros knockout chromatin preleukemic stage2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
20643829
Reads aligned (%)
89.4
Duplicates removed (%)
34.6
Number of peaks
30239 (qval < 1E-05)

mm9

Number of total reads
20643829
Reads aligned (%)
89.3
Duplicates removed (%)
34.8
Number of peaks
30309 (qval < 1E-05)

Base call quality data from DBCLS SRA