SRX099390
GSM803118: H3K27me3 Ikaros knockout chromatin stageI

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse Ik knockout DP thymocytes
genetic background
C57BL/6 x129S4/SvJae
genotype
Ikaros knockout
cell type
DP thymocytes
developmental stage
pre-leukemic stage I
chip antibody
H3K27me3
chip antibody manufacturer
Millipore
chip antibody catalog number
07-449

Sequenced DNA Library

library_name
GSM803118: H3K27me3 Ikaros knockout chromatin stageI
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
22859584
Reads aligned (%)
70.8
Duplicates removed (%)
38.0
Number of peaks
310 (qval < 1E-05)

mm9

Number of total reads
22859584
Reads aligned (%)
70.7
Duplicates removed (%)
38.3
Number of peaks
343 (qval < 1E-05)

Base call quality data from DBCLS SRA