SRX099383
GSM803111: Mi2beta wildtype 1and2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Chd4

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse wt DP thymocytes
genetic background
C57BL/6
genotype
wt
cell type
DP thymocytes
chip antibody
homemade Mi2beta (Chd4)

Sequenced DNA Library

library_name
GSM803111: Mi2beta wildtype 1and2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
13046523
Reads aligned (%)
89.2
Duplicates removed (%)
28.6
Number of peaks
586 (qval < 1E-05)

mm9

Number of total reads
13046523
Reads aligned (%)
88.7
Duplicates removed (%)
28.7
Number of peaks
708 (qval < 1E-05)

Base call quality data from DBCLS SRA