Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Ikzf1

Cell type

Cell type Class
Blood
Cell type
CD4 CD8 double positive cells
NA
NA

Attributes by original data submitter

Sample

source_name
mouse wt DP thymocytes
genetic background
C57BL/6
genotype
wt
cell type
DP thymocytes
chip antibody
homemade Ikaros (Ikzf1)

Sequenced DNA Library

library_name
GSM803110: Ikaros wildtype 1and2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina Genome Analyzer

mm10

Number of total reads
13474677
Reads aligned (%)
81.3
Duplicates removed (%)
11.1
Number of peaks
879 (qval < 1E-05)

mm9

Number of total reads
13474677
Reads aligned (%)
81.1
Duplicates removed (%)
11.3
Number of peaks
951 (qval < 1E-05)

Base call quality data from DBCLS SRA